Pedal-line goes through notes.
Has this been reported yet?
I know you can manually readjust everything in your score, but this seems like a good contender for something to fix in further engraving updates.
(all those screenshots were taken with version 3.6.1)
This is an extremely common sight in my experience. Here's a small screenshot of (almost) one page. The problem persist with about the same frequency throughout the score.